Ancestry prediction using PCA

Ancestry prediction using PCA

Usage

ancestry_prediction(
  report,
  path,
  id,
  analysis_type,
  contrib_status,
  testsnps,
  groups
)

Arguments

report

inferred genotypes

path

write path

id

sample ID

analysis_type

mixure deconvolution type (conditioned vs. unconditioned)

contrib_status

contributor status (major vs. minor)

testsnps

SNP set to use for PCA (All autosomal SNPs or only ancestry SNPs)

groups

How to color PCA plots (superpopulations and/or subpopulations)

Value

NA