Compiling metrics for the range of allele 1 and allele 2 probablity thresholds

Compiling metrics for the range of allele 1 and allele 2 probablity thresholds

Usage

compile_metrics(
  x,
  ref,
  minimum_snps,
  A1min,
  A1max,
  A2min,
  A2max,
  filter_missing
)

Arguments

x

Data frame of allele probabilities and genotype calls

ref

Data frame of reference genotypes

minimum_snps

Minimum number of SNPs required

A1min

Minimum value of allele 1 probability threshold

A1max

Maximum value of allele 1 probability threshold

A2min

Minimum value of allele 2 probability threshold

A2max

Maximum value of allele 2 probability threshold

filter_missing

TRUE/FALSE to filter SNPs with missing allele 2 values

Value

List of data frames compiled using the min/max values of the allele probability thresholds and the minimum number of SNPs