Create GEDmatch PRO report

Create GEDmatch PRO report

Usage

create_gedmatchpro_report(
  path,
  x,
  contrib,
  contrib_status,
  minimum_snps,
  A1,
  A2,
  A1min,
  A1max,
  A2min,
  A2max,
  minor_threshold,
  filter_missing
)

Arguments

path

Write path

x

Data frame of EFM predicted genotypes

contrib

Contributor number from the EFM output file (C1/C2)

contrib_status

Major/Minor

minimum_snps

Minimum number of SNPs required

A1

Allele 1 probability threshold for report

A2

Allele 2 probability threshold for report

A1min

Minimum value for allele 1 probability threshold

A1max

Maximum value for allele 1 probability threshold

A2min

Minimum value for allele 2 probability threshold

A2max

Maximum value for allele 2 probability threshold

minor_threshold

If apply allele 1 probability to minor contributor

filter_missing

TRUE/FALSE to filter SNPs with missing allele 2 values

Value

list of two data frames, the GEDmatch PRO report and a data frame of metrics calculated for that report