Function to determine how to create the AT file — process

This function determines if there is a replicate sample, it will calculate the AT for all SNPs using each sample, then for each SNP will use the higher threshold for the final AT file.

Usage

process_kinreport(sample, rep_sample, kinpath, dynamicAT, staticAT)

Arguments

sample: Sample ID
rep_sample: Replicate ID
kinpath: path of the Kintelligence Sample Reports
dynamicAT: Dynamic analytical threshold
staticAT: Static analytical threshold

Value

Data frame containing the AT for each SNP