Title Running individual EFM SNP sets in parallel — run_indiv_efm_set • mixder

Title Running individual EFM SNP sets in parallel

Usage

run_indiv_efm_set(
  i,
  ids,
  snps_input,
  popFreq,
  refData,
  id,
  replicate_id,
  write_path,
  attable,
  cond = NULL,
  uncond = TRUE
)

Arguments

i: Set number
ids: dataframe of replicate data
snps_input: Path of SNP sets
popFreq: Allele Frequency file
refData: Reference(s) file
id: Sample ID
replicate_id: Replicate ID, if provided
write_path: Path to write output to
attable: AT table
cond: Condition on specific references
uncond: TRUE/FALSE if performing unconditioned analyses

Value

list of mixture ratios for each analysis